API

• Preprocessing
  • Overview
  • Preparing the single-cell dataframe
  • Defining cell-division events
• Analysis
  • The Analysis Object
• Tissue
  • tdm.tissue.Tissue
• Dataset
  • tdm.dataset.Dataset
  • tdm.dataset.NeighborsDataset
  • tdm.dataset.ExtrapolateNeighborsDataset
  • tdm.dataset.RestrictedNeighborsDataset
  • tdm.dataset.PolynomialDataset
• Model
  • tdm.model.Model
  • tdm.model.LogisticRegressionModel
• Plotting
  • Evaluating Model Fit
  • 2D Dynamics
  • 3D Dynamics
• simulate
• raw
  • tdm.raw.breast_mibi
  • tdm.raw.breast_imc