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Getting Started
Examples
Tutorials
API
GitHub
Twitter
Website
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Preprocessing
tdm.preprocess.single_cell_df.check_single_cell_df
tdm.plot.preprocess.ki67.plot_marker_distributions
tdm.preprocess.ki67.transform_ki67
tdm.preprocess.ki67.is_dividing
tdm.plot.preprocess.ki67.plot_fraction_of_dividing_cells
tdm.plot.preprocess.ki67.plot_divisions_per_image
Analysis
tdm.analysis.Analysis
Tissue
tdm.tissue.Tissue
Dataset
tdm.dataset.Dataset
tdm.dataset.NeighborsDataset
tdm.dataset.ExtrapolateNeighborsDataset
tdm.dataset.RestrictedNeighborsDataset
tdm.dataset.PolynomialDataset
Model
tdm.model.Model
tdm.model.LogisticRegressionModel
Plotting
tdm.plot.model.calibration.plot_calibration
tdm.plot.model.calibration.plot_calibration_against_permuted_divisions
tdm.plot.model.pval.LLR_pval_per_cell_type
tdm.plot.model.pval.fit_summary
tdm.plot.two_cells.phase_portrait.plot_phase_portrait
tdm.plot.two_cells.phase_portrait.plot_growth_rate
simulate
raw
tdm.raw.breast_mibi
tdm.raw.breast_imc
API
Analysis
Analysis
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The Analysis Object
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Analysis
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The Analysis Object
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