=========
Plotting
=========

.. currentmodule:: tdm.plot

The :mod:`tdm.plot` module contains ...



Evaluating Model Fit
---------------------

.. rubric:: Calibration

.. autosummary::
   :toctree: generated/
   :nosignatures:

   ~tdm.plot.model.calibration.plot_calibration
   ~tdm.plot.model.calibration.plot_calibration_against_permuted_divisions

.. rubric:: Statistical Signficance

.. autosummary::
   :toctree: generated/
   :nosignatures:

   ~tdm.plot.model.pval.LLR_pval_per_cell_type
   ~tdm.plot.model.pval.fit_summary



2D Dynamics
--------------

.. rubric:: 2D Phase-portrait

.. autosummary::
   :toctree: generated/
   :nosignatures:

   ~tdm.plot.two_cells.phase_portrait.plot_phase_portrait
   ~tdm.plot.two_cells.phase_portrait.plot_growth_rate


.. rubric:: Sensitiviy Analysis

.. .. autosummary::
..    :toctree: generated/
..    :nosignatures:

..    ~tdm.plot.two_cells.sensitivity_analysis.

.. rubric:: Subgroup Comparison


3D Dynamics
--------------

.. rubric:: 2D Phase-portrait (fixed density of 3rd cell)


.. rubric:: 3D Phase-portrait